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Using Cross Stitch Professional Platinum you could try the following if its a simple line drawing (might work in some other programs):

1) Set background colour to white if your paper is white
2) Use import from scanner to get it into cross stitch and check the box to use background colour - this ...

Cross Stitch Professional Platinum was written in the UK (by me!) and is available from stock in UK, USA, Germany, Portugal and Denmark. The UK online store is http://www.dpsoftware.co.uk/catalog/index.php" target="_blank

You can also buy cheaper for download from SWREG (Softshop):
https://gbp ...